Resource

Id DNase-seq/ENCSR386XPDcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR386XPD [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (82 years)"]
Description
Labels
  • accession: ENCSR386XPD
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens dorsolateral prefrontal cortex tissue female adult (82 years)
  • date_created: 2021-04-29T19:28:12.710384+00:00
  • date_released: 2021-06-30
  • doi: 10.17989/ENCSR386XPD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (82 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR386XPD float

DNase-seq_ENCSR386XPD
DNase-seq ENCSR386XPD [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (82 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR386XPD [0.0576, 25.2]
n
20,631,678
mean
1.84
sd
2.62

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 206316780.64% 96727
chr1 1880057 0.76% 8749
chr2 1631221 0.67% 7652
chr3 1007934 0.51% 4759
chr4 761587 0.40% 3401
chr5 922576 0.51% 4346
chr6 884912 0.52% 4156
chr7 1071292 0.67% 5002
chr8 870648 0.60% 4089
chr9 940861 0.68% 4465
chr10 1109134 0.83% 5179
chr11 1286307 0.95% 6044
chr12 907789 0.68% 4211
chr13 363713 0.32% 1705
chr14 725802 0.68% 3419
chr15 677920 0.66% 3224
chr16 817840 0.91% 3862
chr17 1236875 1.49% 5851
chr18 383881 0.48% 1803
chr19 946515 1.61% 4311
chr20 615405 0.95% 2947
chr21 364499 0.78% 1713
chr22 841074 1.66% 4013
chrX 383539 0.25% 1823
chrY 297 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 96727 1 1160 213.3 200
global segment-length histogram

Files

Filename Size md5
ENCFF493KKC.bed.gz 1019.24 KB 302942c4c5fc4d0f53dbaadfb7034831
ENCFF493KKC.tabix.bed.gz 942.0 KB 28d30bc4b631991974af25c0d7e44c05
ENCFF493KKC.tabix.bed.gz.tbi 275.58 KB 67e8cff5b69ff661750cc40a009332c6
genomic_resource.yaml 1.28 KB 34bc24d4fbb34c7432662e238108be63
statistics/