| Id: | DNase-seq/ENCSR386BOX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR386BOX [biosample_summary="Homo sapiens activated naive CD4-positive, alpha-beta T cell male adult (48 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (48 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF057ECO|/files/ENCFF057ECO/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR386BOX | float |
DNase-seq_ENCSR386BOX |
DNase-seq ENCSR386BOX [biosample_summary="Homo sapiens activated naive CD4-positive, alpha-beta T cell male adult (48 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours"]
|
 |
[0.0497, 23.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF660AEY.bed.gz | 787.37 KB | 8b16ae16545377f9ad1d69dc48a1c8f6 |
| ENCFF660AEY.bed.gz.dvc | 100.0 B | a9b7d8d1b059a03147f51d68fa86b263 |
| ENCFF660AEY.tabix.bed.gz | 725.16 KB | d2a6ac615d1eab4ea1c61df0719ad4a8 |
| ENCFF660AEY.tabix.bed.gz.dvc | 106.0 B | 96aa917a45bab78d4a6be9ceaf27284a |
| ENCFF660AEY.tabix.bed.gz.tbi | 297.67 KB | c67fe794e3e5a3a66deab058b4f41975 |
| ENCFF660AEY.tabix.bed.gz.tbi.dvc | 110.0 B | 0346c5f8eb530878f78beabf8bef5742 |
| genomic_resource.yaml | 2.61 KB | 1613d76c22721c56ca00e4f778bd4d4a |
| genomic_resource_original.yaml | 2.39 KB | 1e3ea65c4eb8a261c2645205bdf3b603 |
| statistics/ |