Resource

Id DNase-seq/ENCSR385SZQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR385SZQ [biosample_summary="Homo sapiens MCF 10A treated with 1 \u03BC\ M tamoxifen for 6 hours"]
Description
Labels
  • accession: ENCSR385SZQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001200/
  • biosample_summary: Homo sapiens MCF 10A treated with 1 μM tamoxifen for 6 hours
  • date_created: 2017-11-01T23:57:38.909283+00:00
  • date_released: 2018-01-29
  • doi: 10.17989/ENCSR385SZQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: treated with 1.0 μM tamoxifen for 6.0 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR385SZQ float

DNase-seq_ENCSR385SZQ
DNase-seq ENCSR385SZQ [biosample_summary="Homo sapiens MCF 10A treated with 1 \u03BC\ M tamoxifen for 6 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR385SZQ [0.0466, 38.3]
n
44,114,949
mean
1.71
sd
2.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 441149491.37% 236986
chr1 4222049 1.70% 22496
chr2 3594898 1.48% 19420
chr3 2939249 1.48% 15877
chr4 2572543 1.35% 14058
chr5 2716752 1.50% 14594
chr6 2696102 1.58% 14505
chr7 2123971 1.33% 11527
chr8 2260768 1.56% 12116
chr9 1846020 1.33% 9928
chr10 2109855 1.58% 11356
chr11 2039576 1.51% 10923
chr12 2153198 1.62% 11610
chr13 1255382 1.10% 6791
chr14 1390457 1.30% 7444
chr15 1304367 1.28% 6985
chr16 1254728 1.39% 6669
chr17 1640425 1.97% 8644
chr18 1048792 1.30% 5703
chr19 1204365 2.05% 6199
chr20 1098159 1.70% 5842
chr21 524312 1.12% 2801
chr22 639286 1.26% 3388
chrX 1478426 0.95% 8101
chrY 1269 <0.01% 9
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 236986 1 820 186.15 180
global segment-length histogram

Files

Filename Size md5
ENCFF058FXW.bed.gz 2.54 MB 9a672cc3cf0d6d27362b1ab1b50aefa4
ENCFF058FXW.tabix.bed.gz 2.32 MB 7886d4c7b20e5eb137942eaa4f1fc6d5
ENCFF058FXW.tabix.bed.gz.tbi 738.09 KB 2fbc33cb62d21c76087ff8606e7a7866
genomic_resource.yaml 1.32 KB d85a8e9aee142ca422e52f4edee0c365
statistics/