DNase-seq_ENCSR383SNM
DNase-seq ENCSR383SNM [biosample_summary="Homo sapiens iPS DF 19.11"]
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| Id: | DNase-seq/ENCSR383SNM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR383SNM [biosample_summary="Homo sapiens iPS DF 19.11"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF501MYE|/files/ENCFF501MYE/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR383SNM | float |
DNase-seq_ENCSR383SNM |
DNase-seq ENCSR383SNM [biosample_summary="Homo sapiens iPS DF 19.11"]
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[0.0474, 16.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF172GXY.bed.gz | 1.99 MB | 8874a91a591d90ba6f94349c96f3148a |
| ENCFF172GXY.bed.gz.dvc | 101.0 B | 3c11295c0013d9cf237cc28964714142 |
| ENCFF172GXY.tabix.bed.gz | 1.82 MB | dbeb9c06ce64b379dcf0e9923602e476 |
| ENCFF172GXY.tabix.bed.gz.dvc | 107.0 B | fac1cbd48c0b11172c27a83a18dd58cb |
| ENCFF172GXY.tabix.bed.gz.tbi | 686.76 KB | 75a9ed5c23043405d4856919b16e69e6 |
| ENCFF172GXY.tabix.bed.gz.tbi.dvc | 110.0 B | 9fc3ef8113d9b6d47fc69be41b311c65 |
| genomic_resource.yaml | 1.93 KB | 8dc5ca032ed66c19e4e0a267c9ae11f8 |
| genomic_resource_original.yaml | 1.85 KB | 3527c3ff6d7e34971309efb0e7b29fe8 |
| statistics/ |