Resource
| Id | DNase-seq/ENCSR383BLX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR383BLX [biosample_summary="Homo sapiens fibroblast of skin of right biceps male embryo (97 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (97 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN902PKM|/analyses/ENCAN902PKM/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF945ZEV|/files/ENCFF945ZEV/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 41723636 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF099VGK|/files/ENCFF099VGK/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 41538584 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR383BLX | float |
DNase-seq_ENCSR383BLX |
DNase-seq ENCSR383BLX [biosample_summary="Homo sapiens fibroblast of skin of right biceps male embryo (97 days)"]
|
 |
[1, 2.15e+05] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 52694874 | 1.64% | 351060 |
| chr1 | 4731528 | 1.90% | 31518 |
| chr2 | 4468301 | 1.84% | 29767 |
| chr3 | 3695577 | 1.86% | 24621 |
| chr4 | 3068996 | 1.61% | 20442 |
| chr5 | 3295686 | 1.82% | 21955 |
| chr6 | 3304567 | 1.93% | 22018 |
| chr7 | 2720706 | 1.71% | 18126 |
| chr8 | 2571949 | 1.77% | 17130 |
| chr9 | 2209716 | 1.60% | 14721 |
| chr10 | 2524200 | 1.89% | 16818 |
| chr11 | 2552185 | 1.89% | 17001 |
| chr12 | 2565631 | 1.93% | 17095 |
| chr13 | 1580977 | 1.38% | 10531 |
| chr14 | 1596924 | 1.49% | 10641 |
| chr15 | 1732850 | 1.70% | 11549 |
| chr16 | 1418606 | 1.57% | 9452 |
| chr17 | 1834884 | 2.20% | 12229 |
| chr18 | 1322917 | 1.65% | 8816 |
| chr19 | 1176581 | 2.01% | 7840 |
| chr20 | 1223396 | 1.90% | 8152 |
| chr21 | 641700 | 1.37% | 4277 |
| chr22 | 754448 | 1.48% | 5029 |
| chrX | 1615249 | 1.04% | 10752 |
| chrY | 87300 | 0.15% | 580 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 351060 | 6 | 389 | 150.1 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF686BLY.bed.gz | 3.33 MB | a89c2792729f39ac0cef4c6e0b29acb5 |
| ENCFF686BLY.tabix.bed.gz | 2.9 MB | 983d8107c513aea1f063d7e913dceca2 |
| ENCFF686BLY.tabix.bed.gz.tbi | 849.06 KB | 03d03611e1e22d9e0c5c77bd581a8736 |
| genomic_resource.yaml | 2.64 KB | 831f6c5ce36767be068dd0f97e43c9e6 |
| statistics/ |