DNase-seq_ENCSR383BLX
DNase-seq ENCSR383BLX [biosample_summary="Homo sapiens fibroblast of skin of right biceps male embryo (97 days)"]
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| Id: | DNase-seq/ENCSR383BLX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR383BLX [biosample_summary="Homo sapiens fibroblast of skin of right biceps male embryo (97 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (97 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN902PKM|/analyses/ENCAN902PKM/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF945ZEV|/files/ENCFF945ZEV/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 41723636 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF099VGK|/files/ENCFF099VGK/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 41538584 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR383BLX | float |
DNase-seq_ENCSR383BLX |
DNase-seq ENCSR383BLX [biosample_summary="Homo sapiens fibroblast of skin of right biceps male embryo (97 days)"]
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[1, 2.15e+05] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF686BLY.bed.gz | 3.33 MB | a89c2792729f39ac0cef4c6e0b29acb5 |
| ENCFF686BLY.bed.gz.dvc | 101.0 B | b792907495534220f199af3dea0fc23d |
| ENCFF686BLY.tabix.bed.gz | 2.9 MB | 983d8107c513aea1f063d7e913dceca2 |
| ENCFF686BLY.tabix.bed.gz.dvc | 107.0 B | d4530021cfc784d8fdf9b75a8dc3bb2a |
| ENCFF686BLY.tabix.bed.gz.tbi | 849.06 KB | 03d03611e1e22d9e0c5c77bd581a8736 |
| ENCFF686BLY.tabix.bed.gz.tbi.dvc | 110.0 B | dba2b194e3f24cf724b1bd7114faa5e4 |
| genomic_resource.yaml | 2.64 KB | 831f6c5ce36767be068dd0f97e43c9e6 |
| genomic_resource_original.yaml | 2.53 KB | ace75161b9ea7d614004cabc9ac3e187 |
| statistics/ |