| Id: | DNase-seq/ENCSR380TXB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR380TXB [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours output_type: peaks audit_warning: Alignment file {ENCFF537VIW|/files/ENCFF537VIW/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 27550390 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR380TXB | float |
DNase-seq_ENCSR380TXB |
DNase-seq ENCSR380TXB [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours"]
|
 |
[0.364, 64.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF815QXW.bed.gz | 478.62 KB | f54d64779e4f8de340ff5ae7c06b41da |
| ENCFF815QXW.bed.gz.dvc | 100.0 B | 6874646b0f026ba5e808b9f66b82c312 |
| ENCFF815QXW.tabix.bed.gz | 432.43 KB | 1213ea9b6356f7dc288d6ae104c8a555 |
| ENCFF815QXW.tabix.bed.gz.dvc | 106.0 B | e14a5a2ce6461e9a1fddae352dd384cf |
| ENCFF815QXW.tabix.bed.gz.tbi | 222.83 KB | 1d87c39a3117df869ccc79c38ea4d095 |
| ENCFF815QXW.tabix.bed.gz.tbi.dvc | 110.0 B | 42a80a3328cb7c58fda15b4a0515416d |
| genomic_resource.yaml | 2.47 KB | cab360ec5bc7aac8d08759119d83b0ca |
| genomic_resource_original.yaml | 2.24 KB | 9c7c8c3fad7b3994c1cb725bacc1a1d3 |
| statistics/ |