| Id: | DNase-seq/ENCSR377CRU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR377CRU [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-7 for 4 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-7 for 4 hours output_type: peaks audit_warning: Alignment file {ENCFF469NED|/files/ENCFF469NED/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 34902750 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR377CRU | float |
DNase-seq_ENCSR377CRU |
DNase-seq ENCSR377CRU [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-7 for 4 hours"]
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[0.431, 63] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF223UOE.bed.gz | 427.01 KB | 48dc77842ddd98c1a63f6737ddf5a42d |
| ENCFF223UOE.bed.gz.dvc | 100.0 B | 595ca55791c688aef11c8f1c66431991 |
| ENCFF223UOE.tabix.bed.gz | 384.64 KB | 13adfdaed7a7fe4b986267d6e0095479 |
| ENCFF223UOE.tabix.bed.gz.dvc | 106.0 B | 18e4a9b3e0c973ac726fbdbb30fdf304 |
| ENCFF223UOE.tabix.bed.gz.tbi | 206.44 KB | 0a0a531575bf7068d76a2aa0c4131082 |
| ENCFF223UOE.tabix.bed.gz.tbi.dvc | 110.0 B | 4752372ee222d4b38ae91baad75f6b98 |
| genomic_resource.yaml | 2.45 KB | 8bfd69d799409567f06f89d6f84e1c33 |
| genomic_resource_original.yaml | 2.22 KB | feac2ad144e54fd99b2589a8dbc9abd7 |
| statistics/ |