Resource

Id DNase-seq/ENCSR376DAEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR376DAE [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (20 years)"]
Description
Labels
  • accession: ENCSR376DAE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell male adult (20 years)
  • date_created: 2019-08-24T00:09:40.814912+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR376DAE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (20 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR376DAE float

DNase-seq_ENCSR376DAE
DNase-seq ENCSR376DAE [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (20 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR376DAE [0.0793, 115]
n
9,685,309
mean
6.78
sd
10.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 96853090.30% 52109
chr1 980933 0.39% 5237
chr2 660684 0.27% 3605
chr3 507103 0.26% 2717
chr4 338664 0.18% 1827
chr5 429467 0.24% 2323
chr6 542657 0.32% 2897
chr7 450328 0.28% 2474
chr8 376910 0.26% 2059
chr9 389362 0.28% 2100
chr10 448882 0.34% 2446
chr11 528572 0.39% 2873
chr12 464593 0.35% 2491
chr13 204815 0.18% 1093
chr14 352506 0.33% 1912
chr15 308084 0.30% 1646
chr16 400478 0.44% 2142
chr17 586517 0.70% 3104
chr18 144177 0.18% 800
chr19 627131 1.07% 3246
chr20 260468 0.40% 1418
chr21 140644 0.30% 768
chr22 228788 0.45% 1232
chrX 301775 0.19% 1631
chrY 11771 0.02% 68
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 52109 7 740 185.87 180
global segment-length histogram

Files

Filename Size md5
ENCFF896EFL.bed.gz 593.15 KB 7de8222611934f659629c797c1c320eb
ENCFF896EFL.tabix.bed.gz 541.34 KB b9e66a509012bd3447daf9d3657007c5
ENCFF896EFL.tabix.bed.gz.tbi 227.79 KB 568d59d98eee2f77976902759425283a
genomic_resource.yaml 1.26 KB b5b76c2942dbee1fb857e1e320fcc1c7
statistics/