DNase-seq_ENCSR373TLU
DNase-seq ENCSR373TLU [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (86 years)"]
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| Id: | DNase-seq/ENCSR373TLU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR373TLU [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (86 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (86 years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF328OIF|/files/ENCFF328OIF/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR373TLU | float |
DNase-seq_ENCSR373TLU |
DNase-seq ENCSR373TLU [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (86 years)"]
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[0.0125, 21.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF245WUR.bed.gz | 3.15 MB | 01cff26d6118c51146b0b917c7452f64 |
| ENCFF245WUR.bed.gz.dvc | 101.0 B | 12ff23da5b17acbebcd512945e2be8fc |
| ENCFF245WUR.tabix.bed.gz | 2.95 MB | 3b5dc4d4dace4f44045f156198f7d287 |
| ENCFF245WUR.tabix.bed.gz.dvc | 107.0 B | 7ed8f9be778d198977e1ec61f91142af |
| ENCFF245WUR.tabix.bed.gz.tbi | 443.37 KB | 9951094fe1194337ab5918021f6055fb |
| ENCFF245WUR.tabix.bed.gz.tbi.dvc | 110.0 B | 5cae57f770305a7482fea3978c0295ca |
| genomic_resource.yaml | 2.21 KB | d9fe3662a66e0d5466f5702846fc9302 |
| genomic_resource_original.yaml | 2.06 KB | b9193797d34fc6451ed3e30413a79c92 |
| statistics/ |