DNase-seq_ENCSR373BIX
DNase-seq ENCSR373BIX [biosample_summary="Homo sapiens CD1c-positive myeloid dendritic cell"]
×
| Id: | DNase-seq/ENCSR373BIX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR373BIX [biosample_summary="Homo sapiens CD1c-positive myeloid dendritic cell"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF182NPL|/files/ENCFF182NPL/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.25. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR373BIX | float |
DNase-seq_ENCSR373BIX |
DNase-seq ENCSR373BIX [biosample_summary="Homo sapiens CD1c-positive myeloid dendritic cell"]
|
|
[0.0289, 22.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF459MDW.bed.gz | 1.76 MB | dc9d28f237bb3c65b3a39c6eed2463ec |
| ENCFF459MDW.bed.gz.dvc | 101.0 B | e34c87971273a94953de3a791d66e9f5 |
| ENCFF459MDW.tabix.bed.gz | 1.61 MB | 40658e50bc440bac7efb82f0b25ad64b |
| ENCFF459MDW.tabix.bed.gz.dvc | 107.0 B | 1ed44f92ecc281cbb77dd2272780942d |
| ENCFF459MDW.tabix.bed.gz.tbi | 475.49 KB | c6c91609bee5d91a8ed17d1f193d2b87 |
| ENCFF459MDW.tabix.bed.gz.tbi.dvc | 110.0 B | b153f03cf027d63e0e72636da2f31674 |
| genomic_resource.yaml | 2.0 KB | 8becb6c2d688d3d1192dd31b28120b97 |
| genomic_resource_original.yaml | 1.91 KB | d0337801688afb687707e150fad7c7ba |
| statistics/ |