DNase-seq_ENCSR367WVH
DNase-seq ENCSR367WVH [biosample_summary="Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (33 years)"]
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| Id: | DNase-seq/ENCSR367WVH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR367WVH [biosample_summary="Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (33 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (33 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF517TMD|/files/ENCFF517TMD/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR367WVH | float |
DNase-seq_ENCSR367WVH |
DNase-seq ENCSR367WVH [biosample_summary="Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (33 years)"]
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[0.0582, 27.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF820RAY.bed.gz | 605.4 KB | 9c257308bb90e22266e30e8bdd963b51 |
| ENCFF820RAY.bed.gz.dvc | 100.0 B | bd0ca32963533a8f69cc5ad176b0b996 |
| ENCFF820RAY.tabix.bed.gz | 559.94 KB | 23e5ec852ec4d79d051818ef36f1660a |
| ENCFF820RAY.tabix.bed.gz.dvc | 106.0 B | f9b69a2116a195c0c79f6276e76d9c89 |
| ENCFF820RAY.tabix.bed.gz.tbi | 239.48 KB | 8c15a35e40cbada713ba27e75ec387e6 |
| ENCFF820RAY.tabix.bed.gz.tbi.dvc | 110.0 B | 01cbfaec98aabe31c800c3f7af44e3de |
| genomic_resource.yaml | 2.13 KB | f9b572c8e2de0ab8dd5525c98a5e9b73 |
| genomic_resource_original.yaml | 2.0 KB | 2aa3c5074d74ab1320b44695ce08b34c |
| statistics/ |