Resource

Id DNase-seq/ENCSR366YTDcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR366YTD [biosample_summary="Homo sapiens T-cell male adult (37 years)"]
Description
Labels
  • accession: ENCSR366YTD
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (37 years)
  • date_created: 2015-09-16T21:42:00.064106+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR366YTD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR366YTD float

DNase-seq_ENCSR366YTD
DNase-seq ENCSR366YTD [biosample_summary="Homo sapiens T-cell male adult (37 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR366YTD [2, 2.93e+03]
n
8,291,447
mean
83.7
sd
91.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 82914470.26% 55109
chr1 827096 0.33% 5505
chr2 620863 0.26% 4121
chr3 484694 0.24% 3221
chr4 335940 0.18% 2230
chr5 403206 0.22% 2674
chr6 511389 0.30% 3398
chr7 396939 0.25% 2638
chr8 324433 0.22% 2157
chr9 327196 0.24% 2172
chr10 379254 0.28% 2519
chr11 420643 0.31% 2801
chr12 436964 0.33% 2905
chr13 190574 0.17% 1264
chr14 290250 0.27% 1927
chr15 263148 0.26% 1746
chr16 302456 0.33% 2012
chr17 432770 0.52% 2883
chr18 149100 0.19% 992
chr19 439699 0.75% 2928
chr20 223990 0.35% 1489
chr21 105293 0.23% 700
chr22 174252 0.34% 1158
chrX 238698 0.15% 1586
chrY 12600 0.02% 83
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 55109 34 300 150.46 150
global segment-length histogram

Files

Filename Size md5
ENCFF216NXR.bed.gz 540.98 KB 3c877c2f69bfce245e154e390c294046
ENCFF216NXR.tabix.bed.gz 467.52 KB 8dfd13bdbfe1160736e90310927bd160
ENCFF216NXR.tabix.bed.gz.tbi 268.04 KB 6001191c416f94491b86626e8008c463
genomic_resource.yaml 1.36 KB 03cb16185403ae18f03d144113a3dd96
statistics/