Resource

Id DNase-seq/ENCSR366NBEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR366NBE [biosample_summary="Homo sapiens Calu3"]
Description
Labels
  • accession: ENCSR366NBE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002819/
  • biosample_summary: Homo sapiens Calu3
  • date_created: 2021-04-06T23:56:53.847229+00:00
  • date_released: 2022-01-26
  • doi: 10.17989/ENCSR366NBE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR366NBE float

DNase-seq_ENCSR366NBE

DNase-seq ENCSR366NBE [biosample_summary="Homo sapiens Calu3"]
HISTOGRAM FOR DNase-seq_ENCSR366NBE [0.0718, 585]
n
21,929,025
mean
2.98
sd
5.99

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 219290250.68% 117132
chr1 2155974 0.87% 11447
chr2 1687915 0.70% 9117
chr3 1465721 0.74% 7880
chr4 893984 0.47% 4950
chr5 1193879 0.66% 6408
chr6 1328381 0.78% 7076
chr7 1135091 0.71% 6050
chr8 972947 0.67% 5203
chr9 796870 0.58% 4311
chr10 993447 0.74% 5357
chr11 1055463 0.78% 5638
chr12 1102427 0.83% 5896
chr13 376344 0.33% 2106
chr14 696814 0.65% 3708
chr15 707699 0.69% 3725
chr16 824102 0.91% 4322
chr17 1179079 1.42% 6028
chr18 465768 0.58% 2538
chr19 937634 1.60% 4838
chr20 627748 0.97% 3357
chr21 221579 0.47% 1206
chr22 464602 0.91% 2460
chrX 645417 0.41% 3510
chrY 140 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 117132 1 880 187.22 180
global segment-length histogram

Files

Filename Size md5
ENCFF930GWQ.bed.gz 1.26 MB 2711d54f3b0dc2acb13fa649cf618424
ENCFF930GWQ.tabix.bed.gz 1.15 MB 81ac96a06139056da5e857478204681f
ENCFF930GWQ.tabix.bed.gz.tbi 458.98 KB 3e9e2395f4ad7cd0013881d8009c0485
genomic_resource.yaml 1.06 KB 05dc0c6885e3a6c51852c8309ae02b66
statistics/