Resource

Id DNase-seq/ENCSR366KPRcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR366KPR [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (38 years)"]
Description
Labels
  • accession: ENCSR366KPR
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell male adult (38 years)
  • date_created: 2020-04-19T18:36:51.546068+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR366KPR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR366KPR float

DNase-seq_ENCSR366KPR
DNase-seq ENCSR366KPR [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (38 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR366KPR [0.243, 75.8]
n
7,898,338
mean
8.11
sd
8.97

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 78983380.25% 43300
chr1 803995 0.32% 4399
chr2 530875 0.22% 2917
chr3 426424 0.22% 2315
chr4 262156 0.14% 1415
chr5 341743 0.19% 1875
chr6 450995 0.26% 2448
chr7 356698 0.22% 1972
chr8 292887 0.20% 1610
chr9 325020 0.23% 1772
chr10 346287 0.26% 1895
chr11 414061 0.31% 2303
chr12 407584 0.31% 2220
chr13 159086 0.14% 853
chr14 275836 0.26% 1502
chr15 260646 0.26% 1431
chr16 333508 0.37% 1834
chr17 488519 0.59% 2703
chr18 117658 0.15% 648
chr19 551277 0.94% 2974
chr20 227021 0.35% 1276
chr21 94374 0.20% 523
chr22 200218 0.39% 1122
chrX 224336 0.14% 1252
chrY 7134 0.01% 41
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 43300 12 760 182.41 180
global segment-length histogram

Files

Filename Size md5
ENCFF286LXY.bed.gz 482.82 KB a2c80311ca8b470e8b362afe51646b42
ENCFF286LXY.tabix.bed.gz 438.75 KB 0826536557c87e03ac0bae5798d6c58a
ENCFF286LXY.tabix.bed.gz.tbi 213.36 KB 035fb69f81cdea58b72260147e92b177
genomic_resource.yaml 1.87 KB 92cdad2d451f0173852ec4fcacf83f83
statistics/