Resource

Id DNase-seq/ENCSR366EQHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR366EQH [biosample_summary="Homo sapiens large intestine tissue male embryo (115 days)"]
Description
Labels
  • accession: ENCSR366EQH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000059/
  • biosample_summary: Homo sapiens large intestine tissue male embryo (115 days)
  • date_created: 2015-09-16T21:42:20.469457+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR366EQH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (115 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR366EQH float

DNase-seq_ENCSR366EQH

DNase-seq ENCSR366EQH [biosample_summary="Homo sapiens large intestine tissue male embryo (115 days)"]
HISTOGRAM FOR DNase-seq_ENCSR366EQH [3, 1.06e+03]
n
9,014,986
mean
47.9
sd
50.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 90149860.28% 59900
chr1 866755 0.35% 5765
chr2 707179 0.29% 4694
chr3 576454 0.29% 3820
chr4 447061 0.24% 2969
chr5 476121 0.26% 3164
chr6 541005 0.32% 3589
chr7 454917 0.29% 3024
chr8 394128 0.27% 2618
chr9 385876 0.28% 2564
chr10 424919 0.32% 2820
chr11 461721 0.34% 3075
chr12 454081 0.34% 3018
chr13 232584 0.20% 1541
chr14 289536 0.27% 1921
chr15 280438 0.27% 1863
chr16 313640 0.35% 2087
chr17 397571 0.48% 2645
chr18 197371 0.25% 1313
chr19 371087 0.63% 2472
chr20 237056 0.37% 1574
chr21 104550 0.22% 696
chr22 170344 0.34% 1135
chrX 222042 0.14% 1476
chrY 8550 0.01% 57
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 59900 31 419 150.5 150
global segment-length histogram

Files

Filename Size md5
ENCFF343JUT.bed.gz 584.55 KB b74551268c7ebfb23f194bdaafab0d49
ENCFF343JUT.tabix.bed.gz 500.5 KB 569a978fd8d0151b1370650344354462
ENCFF343JUT.tabix.bed.gz.tbi 322.38 KB 82a710198a875013d85f53b5eb8857ed
genomic_resource.yaml 2.6 KB a3996a6ccf5764023eb4f7b36eb56e2b
statistics/