DNase-seq_ENCSR366EGE
DNase-seq ENCSR366EGE [biosample_summary="Homo sapiens heart tissue embryo (101 days)"]
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| Id: | DNase-seq/ENCSR366EGE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR366EGE [biosample_summary="Homo sapiens heart tissue embryo (101 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: embryo (101 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN297ORP|/analyses/ENCAN297ORP/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF222DQW|/files/ENCFF222DQW/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 36208516 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF926JRS|/files/ENCFF926JRS/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 36049308 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR366EGE | float |
DNase-seq_ENCSR366EGE |
DNase-seq ENCSR366EGE [biosample_summary="Homo sapiens heart tissue embryo (101 days)"]
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[2, 3.14e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF262FPE.bed.gz | 1.06 MB | 7f20235daa0253bdb2c8c84f0baca3cf |
| ENCFF262FPE.bed.gz.dvc | 101.0 B | 88e4dc6305d4a637c1291d32fca26fce |
| ENCFF262FPE.tabix.bed.gz | 928.35 KB | b347b0d45055aa096fbe16518d860b4f |
| ENCFF262FPE.tabix.bed.gz.dvc | 106.0 B | 59772dd14cdc20377274d8d352c64968 |
| ENCFF262FPE.tabix.bed.gz.tbi | 506.74 KB | 9af311df26b1201d35d1ea1e67f18f12 |
| ENCFF262FPE.tabix.bed.gz.tbi.dvc | 110.0 B | 05c71e3408610d6ae896418b0a5bf5ce |
| genomic_resource.yaml | 2.55 KB | dc4ba93b0cc37e3fe92f8f8ed39086b1 |
| genomic_resource_original.yaml | 2.46 KB | 720d36d661fbbe6a97bad9ea6b4c9d27 |
| statistics/ |