DNase-seq_ENCSR365NDK
DNase-seq ENCSR365NDK [biosample_summary="Homo sapiens ovary tissue female adult (51 years)"]
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| Id: | DNase-seq/ENCSR365NDK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR365NDK [biosample_summary="Homo sapiens ovary tissue female adult (51 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN784ZNC|/analyses/ENCAN784ZNC/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF492NLF|/files/ENCFF492NLF/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR365NDK | float |
DNase-seq_ENCSR365NDK |
DNase-seq ENCSR365NDK [biosample_summary="Homo sapiens ovary tissue female adult (51 years)"]
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[6, 5.82e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF442RVC.bed.gz | 236.07 KB | 76c13d8c002918ca49ce916d1a656a00 |
| ENCFF442RVC.bed.gz.dvc | 100.0 B | c7d1ab69c823022aa94712c53d661a12 |
| ENCFF442RVC.tabix.bed.gz | 200.71 KB | ec5356c0ab041145ff385b57ecc8ffee |
| ENCFF442RVC.tabix.bed.gz.dvc | 106.0 B | 28e82675333eba8f24a62ce82a2d9d5c |
| ENCFF442RVC.tabix.bed.gz.tbi | 144.4 KB | dabf153e9e2f2561d0a2a9d1bced5704 |
| ENCFF442RVC.tabix.bed.gz.tbi.dvc | 110.0 B | e56c85c7d206837aca932595b1dba427 |
| genomic_resource.yaml | 2.18 KB | 99e304a69759acf5fef73df6e14926ed |
| genomic_resource_original.yaml | 2.09 KB | 60e33b61f9eba4fdb539fe7c32f3ca98 |
| statistics/ |