Resource

Id DNase-seq/ENCSR365CUBcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR365CUB [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (35 years) treated with 10 ng/mL Interleukin-2 for 14 days, anti-CD3 and anti-CD28 coated beads for 24 hours, anti-CD3 and anti-CD28 coated beads for 14 days"]
Description
Labels
  • accession: ENCSR365CUB
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000896/
  • biosample_summary: Homo sapiens activated CD4-positive, alpha-beta T cell male adult (35 years) treated with 10 ng/mL Interleukin-2 for 14 days, anti-CD3 and anti-CD28 coated beads for 24 hours, anti-CD3 and anti-CD28 coated beads for 14 days
  • date_created: 2021-09-29T23:48:43.431703+00:00
  • date_released: 2022-03-01
  • doi: 10.17989/ENCSR365CUB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (35 years) treated with 10 ng/mL Interleukin-2 for 14 days, anti-CD3 and anti-CD28 coated beads for 24 hours, anti-CD3 and anti-CD28 coated beads for 14 days
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR365CUB float

DNase-seq_ENCSR365CUB
DNase-seq ENCSR365CUB [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (35 years) treated with 10 ng/mL Interleukin-2 for 14 days, anti-CD3 and anti-CD28 coated beads for 24 hours, anti-CD3 and anti-CD28 coated beads for 14 days"]
 HISTOGRAM FOR DNase-seq_ENCSR365CUB [0.0104, 34]
n
51,532,712
mean
0.998
sd
2.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 515327121.60% 236489
chr1 4492852 1.80% 20221
chr2 4989102 2.06% 22853
chr3 3234211 1.63% 15081
chr4 2310691 1.21% 10764
chr5 2931318 1.61% 13615
chr6 3336263 1.95% 15263
chr7 2641399 1.66% 12250
chr8 2427937 1.67% 11329
chr9 1993726 1.44% 9168
chr10 2540600 1.90% 11610
chr11 2379808 1.76% 10916
chr12 2322332 1.74% 10612
chr13 1411161 1.23% 6538
chr14 1730917 1.62% 7935
chr15 2093840 2.05% 9539
chr16 1392750 1.54% 6412
chr17 2194917 2.64% 9871
chr18 1255581 1.56% 5817
chr19 1757889 3.00% 7993
chr20 1288962 2.00% 5881
chr21 679941 1.46% 3155
chr22 908388 1.79% 4104
chrX 1161411 0.74% 5268
chrY 56716 0.10% 294
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 236489 1 1380 217.91 200
global segment-length histogram

Files

Filename Size md5
ENCFF849QFO.bed.gz 2.41 MB 1d1ef88c53468fdff028d85915e1a6eb
ENCFF849QFO.tabix.bed.gz 2.27 MB 76d0bda5f983a8163130fab27dca635a
ENCFF849QFO.tabix.bed.gz.tbi 425.83 KB 96f2d70465a064aa0fbc717b4cc6e9be
genomic_resource.yaml 2.04 KB 88d4f86637926ed67e4feee20a511281
statistics/