DNase-seq_ENCSR364TKL
DNase-seq ENCSR364TKL [biosample_summary="Homo sapiens renal pelvis tissue male embryo (97 days)"]
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| Id: | DNase-seq/ENCSR364TKL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR364TKL [biosample_summary="Homo sapiens renal pelvis tissue male embryo (97 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (97 days) output_type: peaks audit_warning: Alignment file {ENCFF520WIK|/files/ENCFF520WIK/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 27764601 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF520WIK|/files/ENCFF520WIK/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.40. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR364TKL | float |
DNase-seq_ENCSR364TKL |
DNase-seq ENCSR364TKL [biosample_summary="Homo sapiens renal pelvis tissue male embryo (97 days)"]
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[0.289, 18] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF039LHP.bed.gz | 500.3 KB | 4d98ee50981716f4863c0d45960256f4 |
| ENCFF039LHP.bed.gz.dvc | 100.0 B | 1464753e3d1a286f7c5d3421adfeb6eb |
| ENCFF039LHP.tabix.bed.gz | 445.87 KB | 3f8fe813ddff39891f9374fa040155ed |
| ENCFF039LHP.tabix.bed.gz.dvc | 106.0 B | 537bd2ead08316592489b72dfb26634c |
| ENCFF039LHP.tabix.bed.gz.tbi | 273.81 KB | cb850572bf83d006a27e29cc48e77fbd |
| ENCFF039LHP.tabix.bed.gz.tbi.dvc | 110.0 B | 31523af8b1a48889a92c3b0f2c606cb3 |
| genomic_resource.yaml | 2.65 KB | b164c3e3342e2f0070dd9d9d1009e2b0 |
| genomic_resource_original.yaml | 2.55 KB | 5527085d03312f8aac161bb86147b189 |
| statistics/ |