DNase-seq_ENCSR364MFN
DNase-seq ENCSR364MFN [biosample_summary="Homo sapiens hepatocyte originated from H9"]
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| Id: | DNase-seq/ENCSR364MFN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR364MFN [biosample_summary="Homo sapiens hepatocyte originated from H9"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (5 days) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF538CJS|/files/ENCFF538CJS/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF851CVH|/files/ENCFF851CVH/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR364MFN | float |
DNase-seq_ENCSR364MFN |
DNase-seq ENCSR364MFN [biosample_summary="Homo sapiens hepatocyte originated from H9"]
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[0.0241, 13.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF592AII.bed.gz | 1.8 MB | 5a03a9935564df0fa7502570bf0d1bb0 |
| ENCFF592AII.bed.gz.dvc | 101.0 B | 2cc437c655efe127a39d07cbe4720335 |
| ENCFF592AII.tabix.bed.gz | 1.65 MB | 72d418833981fe1397544601298d1c8d |
| ENCFF592AII.tabix.bed.gz.dvc | 107.0 B | b07e565b54187f022d39ba8861928144 |
| ENCFF592AII.tabix.bed.gz.tbi | 571.94 KB | 5081a782e27bf07a11ef75cc9bd9ff37 |
| ENCFF592AII.tabix.bed.gz.tbi.dvc | 110.0 B | 028135e607a44ac7dd380d9cfb1d1664 |
| genomic_resource.yaml | 2.84 KB | 381340959a3f408e16d7956cc7cb258a |
| genomic_resource_original.yaml | 2.75 KB | fafb3ad111a3603ee8aa1eda226de4b8 |
| statistics/ |