Resource

Id DNase-seq/ENCSR363LUKcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR363LUK [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (26 years) treated with Interleukin-15 for 1 hour"]
Description
Labels
  • accession: ENCSR363LUK
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell female adult (26 years) treated with Interleukin-15 for 1 hour
  • date_created: 2018-11-30T18:43:54.257327+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR363LUK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (26 years) treated with Interleukin-15 for 1 hour
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR363LUK float

DNase-seq_ENCSR363LUK

DNase-seq ENCSR363LUK [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (26 years) treated with Interleukin-15 for 1 hour"]
HISTOGRAM FOR DNase-seq_ENCSR363LUK [0.0243, 173]
n
15,080,087
mean
5.32
sd
12.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 150800870.47% 81393
chr1 1426906 0.57% 7731
chr2 1099322 0.45% 5977
chr3 825430 0.42% 4454
chr4 520340 0.27% 2864
chr5 639489 0.35% 3479
chr6 808819 0.47% 4376
chr7 710821 0.45% 3874
chr8 634455 0.44% 3453
chr9 633888 0.46% 3409
chr10 744099 0.56% 4083
chr11 843877 0.62% 4575
chr12 717225 0.54% 3857
chr13 252874 0.22% 1365
chr14 536662 0.50% 2888
chr15 471837 0.46% 2573
chr16 619185 0.69% 3303
chr17 907752 1.09% 4829
chr18 233099 0.29% 1265
chr19 915600 1.56% 4653
chr20 469928 0.73% 2583
chr21 225963 0.48% 1257
chr22 442983 0.87% 2409
chrX 398793 0.26% 2131
chrY 740 <0.01% 5
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 81393 4 800 185.27 180
global segment-length histogram

Files

Filename Size md5
ENCFF539ZUQ.bed.gz 916.15 KB 032888b6d760cdffb9d581d8ec101be2
ENCFF539ZUQ.tabix.bed.gz 833.6 KB ef43640e1c10744be70ac7941a2476b6
ENCFF539ZUQ.tabix.bed.gz.tbi 286.87 KB d1f6567494cda97bd364d871f07180c1
genomic_resource.yaml 1.46 KB caef438afb812f76b79cdec4a4b3815d
statistics/