DNase-seq_ENCSR362ZFC
DNase-seq ENCSR362ZFC [biosample_summary="Homo sapiens type B pancreatic cell"]
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| Id: | DNase-seq/ENCSR362ZFC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR362ZFC [biosample_summary="Homo sapiens type B pancreatic cell"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (5 days) output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF843AJO|/files/ENCFF843AJO/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.23. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR362ZFC | float |
DNase-seq_ENCSR362ZFC |
DNase-seq ENCSR362ZFC [biosample_summary="Homo sapiens type B pancreatic cell"]
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[0.046, 7.61] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF485UZT.bed.gz | 907.54 KB | b30205504c98aedd8d199822f84fbce4 |
| ENCFF485UZT.bed.gz.dvc | 100.0 B | 1003b35f140f15f738cf37cb381aa81d |
| ENCFF485UZT.tabix.bed.gz | 866.96 KB | 4fb222e84c13abe889c1dda8c599255a |
| ENCFF485UZT.tabix.bed.gz.dvc | 106.0 B | e6691c0eb6f48824c31a71a5797e9597 |
| ENCFF485UZT.tabix.bed.gz.tbi | 205.03 KB | f357a303e507b03aab2e27d79c518ae2 |
| ENCFF485UZT.tabix.bed.gz.tbi.dvc | 110.0 B | bddfe696c9d64e21ca3d3446da08b183 |
| genomic_resource.yaml | 1.99 KB | 4ffdfc077e32b793f6659a28f2739c2e |
| genomic_resource_original.yaml | 1.9 KB | 226d158e385a1a7ed77e81692644d59b |
| statistics/ |