Resource

Id DNase-seq/ENCSR362JSZcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR362JSZ [biosample_summary="Homo sapiens hematopoietic multipotent progenitor cell treated with interleukin-3 for 17 days, kit ligand for 17 days, hydrocortisone succinate for 17 days, erythropoietin for 17 days"]
Description
Labels
  • accession: ENCSR362JSZ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000837/
  • biosample_summary: Homo sapiens hematopoietic multipotent progenitor cell treated with interleukin-3 for 17 days, kit ligand for 17 days, hydrocortisone succinate for 17 days, erythropoietin for 17 days
  • date_created: 2015-03-29T22:10:50.984093+00:00
  • date_released: 2015-11-05
  • doi: 10.17989/ENCSR362JSZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (25 years) treated with interleukin-3 for 17 days, kit ligand for 17 days, hydrocortisone succinate for 17 days, erythropoietin for 17 days
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR362JSZ float

DNase-seq_ENCSR362JSZ
DNase-seq ENCSR362JSZ [biosample_summary="Homo sapiens hematopoietic multipotent progenitor cell treated with interleukin-3 for 17 days, kit ligand for 17 days, hydrocortisone succinate for 17 days, erythropoietin for 17 days"]
 HISTOGRAM FOR DNase-seq_ENCSR362JSZ [2, 148]
n
8,445,160
mean
54.2
sd
33.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 84451600.26% 59064
chr1 907980 0.36% 6376
chr2 570900 0.24% 3989
chr3 499220 0.25% 3479
chr4 317290 0.17% 2237
chr5 409880 0.23% 2863
chr6 533890 0.31% 3793
chr7 386170 0.24% 2725
chr8 290460 0.20% 2023
chr9 344820 0.25% 2413
chr10 358050 0.27% 2499
chr11 484040 0.36% 3348
chr12 431930 0.32% 3013
chr13 174280 0.15% 1213
chr14 283720 0.27% 1983
chr15 260040 0.25% 1797
chr16 335450 0.37% 2381
chr17 483840 0.58% 3408
chr18 138760 0.17% 961
chr19 491520 0.84% 3421
chr20 233770 0.36% 1600
chr21 78480 0.17% 556
chr22 209820 0.41% 1450
chrX 210340 0.13% 1453
chrY 10510 0.02% 83
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 59064 10 290 142.98 150
global segment-length histogram

Files

Filename Size md5
ENCFF991HHP.bed.gz 527.61 KB 19c1f1dabf7b53e25810d86b6db06faf
ENCFF991HHP.tabix.bed.gz 483.92 KB 9155ffe365f3df08643be0cd028d15b1
ENCFF991HHP.tabix.bed.gz.tbi 236.87 KB 95ff2302b94bc720771f32e755cb6d26
genomic_resource.yaml 1.89 KB 275055c4e2ff161ffd6880569ed4c72a
statistics/