DNase-seq_ENCSR361DND
DNase-seq ENCSR361DND [biosample_summary="Homo sapiens lower leg skin tissue male adult (37 years)"]
×
| Id: | DNase-seq/ENCSR361DND |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR361DND [biosample_summary="Homo sapiens lower leg skin tissue male adult (37 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN173ZJS|/analyses/ENCAN173ZJS/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF797FCA|/files/ENCFF797FCA/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR361DND | float |
DNase-seq_ENCSR361DND |
DNase-seq ENCSR361DND [biosample_summary="Homo sapiens lower leg skin tissue male adult (37 years)"]
|
|
[5, 7.31e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF364OTY.bed.gz | 724.79 KB | 72f23dc32df638938e4686ccecef76b4 |
| ENCFF364OTY.bed.gz.dvc | 100.0 B | 431e87c11be2832981db5e4433921eae |
| ENCFF364OTY.tabix.bed.gz | 617.04 KB | 44a2add2741516b7c6edd19c519f2b4e |
| ENCFF364OTY.tabix.bed.gz.dvc | 106.0 B | a49798a0e1fc395c406c97c59ad7ea9a |
| ENCFF364OTY.tabix.bed.gz.tbi | 345.36 KB | 2f2ee43e065d661a999cc4ca44501f35 |
| ENCFF364OTY.tabix.bed.gz.tbi.dvc | 110.0 B | e9a83647b016dc884967ad744b4b58e9 |
| genomic_resource.yaml | 2.2 KB | 0929f7274dcca16a9433fe9c3a66b71a |
| genomic_resource_original.yaml | 2.1 KB | cfac4f49df8c12820bccb05ecee22583 |
| statistics/ |