Resource
| Id | DNase-seq/ENCSR361DND |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR361DND [biosample_summary="Homo sapiens lower leg skin tissue male adult (37 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN173ZJS|/analyses/ENCAN173ZJS/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF797FCA|/files/ENCFF797FCA/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR361DND | float |
DNase-seq_ENCSR361DND |
DNase-seq ENCSR361DND [biosample_summary="Homo sapiens lower leg skin tissue male adult (37 years)"]
|
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[5, 7.31e+03] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 10927584 | 0.34% | 72686 |
| chr1 | 1049913 | 0.42% | 6984 |
| chr2 | 858917 | 0.35% | 5714 |
| chr3 | 692194 | 0.35% | 4607 |
| chr4 | 476904 | 0.25% | 3170 |
| chr5 | 581745 | 0.32% | 3874 |
| chr6 | 648213 | 0.38% | 4309 |
| chr7 | 530260 | 0.33% | 3525 |
| chr8 | 485365 | 0.33% | 3231 |
| chr9 | 473227 | 0.34% | 3149 |
| chr10 | 548710 | 0.41% | 3654 |
| chr11 | 551225 | 0.41% | 3664 |
| chr12 | 547444 | 0.41% | 3644 |
| chr13 | 260101 | 0.23% | 1731 |
| chr14 | 354844 | 0.33% | 2353 |
| chr15 | 378378 | 0.37% | 2518 |
| chr16 | 383156 | 0.42% | 2551 |
| chr17 | 500900 | 0.60% | 3327 |
| chr18 | 216315 | 0.27% | 1437 |
| chr19 | 452327 | 0.77% | 3007 |
| chr20 | 297647 | 0.46% | 1982 |
| chr21 | 131829 | 0.28% | 877 |
| chr22 | 209205 | 0.41% | 1393 |
| chrX | 283315 | 0.18% | 1882 |
| chrY | 15450 | 0.03% | 103 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 72686 | 1 | 450 | 150.34 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF364OTY.bed.gz | 724.79 KB | 72f23dc32df638938e4686ccecef76b4 |
| ENCFF364OTY.tabix.bed.gz | 617.04 KB | 44a2add2741516b7c6edd19c519f2b4e |
| ENCFF364OTY.tabix.bed.gz.tbi | 345.36 KB | 2f2ee43e065d661a999cc4ca44501f35 |
| genomic_resource.yaml | 2.2 KB | 0929f7274dcca16a9433fe9c3a66b71a |
| statistics/ |
