DNase-seq_ENCSR360XIS
DNase-seq ENCSR360XIS [biosample_summary="Homo sapiens ecto neural progenitor cell originated from H9"]
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| Id: | DNase-seq/ENCSR360XIS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR360XIS [biosample_summary="Homo sapiens ecto neural progenitor cell originated from H9"] |
| Description: |
status: archived biological_replicates: Rep 1 summary: female embryo (5 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN330JXT|/analyses/ENCAN330JXT/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF939WNT|/files/ENCFF939WNT/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF991DAZ|/files/ENCFF991DAZ/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR360XIS | float |
DNase-seq_ENCSR360XIS |
DNase-seq ENCSR360XIS [biosample_summary="Homo sapiens ecto neural progenitor cell originated from H9"]
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[1, 1.35e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF932KNY.bed.gz | 2.69 MB | 745c2fee3bd281aff6cb95f394c45ebd |
| ENCFF932KNY.bed.gz.dvc | 101.0 B | 944a72a6d08a9829cce26bf3f744d4cf |
| ENCFF932KNY.tabix.bed.gz | 2.31 MB | c941013baeebd8ada6e53a8364724586 |
| ENCFF932KNY.tabix.bed.gz.dvc | 107.0 B | cd4c261c84c804e01d55bde4642f9679 |
| ENCFF932KNY.tabix.bed.gz.tbi | 550.35 KB | c236181b9f03c22fa1f3ab97345c3421 |
| ENCFF932KNY.tabix.bed.gz.tbi.dvc | 110.0 B | aadf0e4ab8064a8b167ed2736ef6282d |
| genomic_resource.yaml | 3.28 KB | 5b792e14303c8df19c4e342962bc3d08 |
| genomic_resource_original.yaml | 3.18 KB | 3e9529bba41b5492b10fefeabc85ad96 |
| statistics/ |