Resource

Id DNase-seq/ENCSR360LBDcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR360LBD [biosample_summary="Homo sapiens fibroblast of skin of scalp male embryo (97 days)"]
Description
Labels
  • accession: ENCSR360LBD
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_4006001/
  • biosample_summary: Homo sapiens fibroblast of skin of scalp male embryo (97 days)
  • date_created: 2015-09-16T21:42:13.382375+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR360LBD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (97 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR360LBD float

DNase-seq_ENCSR360LBD
DNase-seq ENCSR360LBD [biosample_summary="Homo sapiens fibroblast of skin of scalp male embryo (97 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR360LBD [0.198, 47.6]
n
14,267,021
mean
4.61
sd
4.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 142670210.44% 78835
chr1 1323775 0.53% 7323
chr2 1189666 0.49% 6592
chr3 982878 0.50% 5427
chr4 741855 0.39% 4159
chr5 868524 0.48% 4782
chr6 890018 0.52% 4908
chr7 715180 0.45% 3963
chr8 667278 0.46% 3695
chr9 612930 0.44% 3360
chr10 663262 0.50% 3681
chr11 735581 0.54% 4071
chr12 698880 0.52% 3878
chr13 387595 0.34% 2144
chr14 443298 0.41% 2440
chr15 466699 0.46% 2595
chr16 438997 0.49% 2419
chr17 554117 0.67% 3051
chr18 318250 0.40% 1799
chr19 460808 0.79% 2413
chr20 342004 0.53% 1885
chr21 179014 0.38% 984
chr22 233560 0.46% 1281
chrX 336824 0.22% 1898
chrY 16028 0.03% 87
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 78835 4 720 180.97 180
global segment-length histogram

Files

Filename Size md5
ENCFF681CQK.bed.gz 849.06 KB bd1a9430890ba560c5f20d9febe7f476
ENCFF681CQK.tabix.bed.gz 755.44 KB 3f7ce58fa8616bee13f8a07c8ae48070
ENCFF681CQK.tabix.bed.gz.tbi 408.83 KB 12f514b1aeebd9d14b7061ab93fb83bb
genomic_resource.yaml 1.86 KB d3458002762d40a2c159019c029bdf58
statistics/