Resource

Id DNase-seq/ENCSR357REDcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR357RED [biosample_summary="Homo sapiens muscle of back tissue male embryo (105 days)"]
Description
Labels
  • accession: ENCSR357RED
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002324/
  • biosample_summary: Homo sapiens muscle of back tissue male embryo (105 days)
  • date_created: 2015-09-16T21:42:58.182636+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR357RED
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (105 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR357RED float

DNase-seq_ENCSR357RED
DNase-seq ENCSR357RED [biosample_summary="Homo sapiens muscle of back tissue male embryo (105 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR357RED [2, 1.25e+03]
n
12,964,345
mean
43.3
sd
38.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 129643450.40% 85868
chr1 1127202 0.45% 7473
chr2 1067216 0.44% 7058
chr3 872018 0.44% 5775
chr4 712126 0.37% 4708
chr5 762945 0.42% 5054
chr6 838553 0.49% 5545
chr7 663140 0.42% 4396
chr8 656172 0.45% 4351
chr9 529838 0.38% 3510
chr10 656314 0.49% 4355
chr11 629060 0.47% 4169
chr12 649812 0.49% 4301
chr13 408642 0.36% 2698
chr14 419181 0.39% 2786
chr15 393342 0.39% 2608
chr16 372265 0.41% 2469
chr17 479762 0.58% 3184
chr18 304694 0.38% 2014
chr19 393976 0.67% 2614
chr20 302744 0.47% 2003
chr21 156252 0.33% 1035
chr22 194084 0.38% 1288
chrX 360907 0.23% 2380
chrY 14100 0.02% 94
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 85868 1 600 150.98 150
global segment-length histogram

Files

Filename Size md5
ENCFF540HZS.bed.gz 825.95 KB a8ab4285fb779a97238796f0ce845083
ENCFF540HZS.tabix.bed.gz 707.92 KB 06f40b5f895b949d34bcfdd318592dd3
ENCFF540HZS.tabix.bed.gz.tbi 391.95 KB 32f55fcfe71e7fb8a2718431313af913
genomic_resource.yaml 1.4 KB fa8de9916c904e6ffa36819b1e03861b
statistics/