Resource
| Id | DNase-seq/ENCSR357PMV |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR357PMV [biosample_summary="Homo sapiens muscle of arm tissue female embryo (120 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (120 days) output_type: peaks audit_warning: Alignment file {ENCFF590PWV|/files/ENCFF590PWV/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 38631803 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR357PMV | float |
DNase-seq_ENCSR357PMV |
DNase-seq ENCSR357PMV [biosample_summary="Homo sapiens muscle of arm tissue female embryo (120 days)"]
|
![]() |
[0.21, 29.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 11068211 | 0.34% | 60646 |
| chr1 | 1013602 | 0.41% | 5484 |
| chr2 | 876245 | 0.36% | 4850 |
| chr3 | 704331 | 0.36% | 3903 |
| chr4 | 551314 | 0.29% | 3076 |
| chr5 | 604061 | 0.33% | 3341 |
| chr6 | 675875 | 0.40% | 3688 |
| chr7 | 535390 | 0.34% | 2982 |
| chr8 | 504563 | 0.35% | 2835 |
| chr9 | 478567 | 0.35% | 2615 |
| chr10 | 528366 | 0.39% | 2919 |
| chr11 | 573843 | 0.42% | 3099 |
| chr12 | 559927 | 0.42% | 3042 |
| chr13 | 286171 | 0.25% | 1599 |
| chr14 | 367704 | 0.34% | 2002 |
| chr15 | 361887 | 0.35% | 1938 |
| chr16 | 352928 | 0.39% | 1941 |
| chr17 | 481408 | 0.58% | 2582 |
| chr18 | 229442 | 0.29% | 1319 |
| chr19 | 472596 | 0.81% | 2370 |
| chr20 | 271384 | 0.42% | 1500 |
| chr21 | 125644 | 0.27% | 700 |
| chr22 | 195448 | 0.38% | 1084 |
| chrX | 317253 | 0.20% | 1775 |
| chrY | 262 | <0.01% | 2 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 60646 | 1 | 760 | 182.51 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF623ANV.bed.gz | 651.91 KB | 666f4ff6fcfddbb7552b96c890df1863 |
| ENCFF623ANV.tabix.bed.gz | 582.08 KB | ca982d6effc5fd5296c9583f7706ec46 |
| ENCFF623ANV.tabix.bed.gz.tbi | 322.17 KB | ed55c8e3561ece193fa5b5f213017132 |
| genomic_resource.yaml | 1.85 KB | 715ea236df604f7b7b378d766d5f6d99 |
| statistics/ |
