Resource

Id DNase-seq/ENCSR357PMVcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR357PMV [biosample_summary="Homo sapiens muscle of arm tissue female embryo (120 days)"]
Description
Labels
  • accession: ENCSR357PMV
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001499/
  • biosample_summary: Homo sapiens muscle of arm tissue female embryo (120 days)
  • date_created: 2015-09-16T21:42:40.252486+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR357PMV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (120 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR357PMV float

DNase-seq_ENCSR357PMV

DNase-seq ENCSR357PMV [biosample_summary="Homo sapiens muscle of arm tissue female embryo (120 days)"]
HISTOGRAM FOR DNase-seq_ENCSR357PMV [0.21, 29.6]
n
11,068,211
mean
3.44
sd
3.87

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 110682110.34% 60646
chr1 1013602 0.41% 5484
chr2 876245 0.36% 4850
chr3 704331 0.36% 3903
chr4 551314 0.29% 3076
chr5 604061 0.33% 3341
chr6 675875 0.40% 3688
chr7 535390 0.34% 2982
chr8 504563 0.35% 2835
chr9 478567 0.35% 2615
chr10 528366 0.39% 2919
chr11 573843 0.42% 3099
chr12 559927 0.42% 3042
chr13 286171 0.25% 1599
chr14 367704 0.34% 2002
chr15 361887 0.35% 1938
chr16 352928 0.39% 1941
chr17 481408 0.58% 2582
chr18 229442 0.29% 1319
chr19 472596 0.81% 2370
chr20 271384 0.42% 1500
chr21 125644 0.27% 700
chr22 195448 0.38% 1084
chrX 317253 0.20% 1775
chrY 262 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 60646 1 760 182.51 180
global segment-length histogram

Files

Filename Size md5
ENCFF623ANV.bed.gz 651.91 KB 666f4ff6fcfddbb7552b96c890df1863
ENCFF623ANV.tabix.bed.gz 582.08 KB ca982d6effc5fd5296c9583f7706ec46
ENCFF623ANV.tabix.bed.gz.tbi 322.17 KB ed55c8e3561ece193fa5b5f213017132
genomic_resource.yaml 1.85 KB 715ea236df604f7b7b378d766d5f6d99
statistics/