DNase-seq_ENCSR356QCD
DNase-seq ENCSR356QCD [biosample_summary="Homo sapiens muscle of arm tissue male embryo (101 days)"]
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| Id: | DNase-seq/ENCSR356QCD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR356QCD [biosample_summary="Homo sapiens muscle of arm tissue male embryo (101 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (101 days) output_type: peaks audit_warning: Alignment file {ENCFF656VNC|/files/ENCFF656VNC/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 20300900 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF656VNC|/files/ENCFF656VNC/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR356QCD | float |
DNase-seq_ENCSR356QCD |
DNase-seq ENCSR356QCD [biosample_summary="Homo sapiens muscle of arm tissue male embryo (101 days)"]
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[0.346, 12.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF986SYJ.bed.gz | 311.4 KB | f72c20821ed5a77c1897cb84179e8ebb |
| ENCFF986SYJ.bed.gz.dvc | 100.0 B | 2dd63aed946a90ca73010ec4f48798bf |
| ENCFF986SYJ.tabix.bed.gz | 276.73 KB | 9db8571440e2611671d00c47aa70c5c4 |
| ENCFF986SYJ.tabix.bed.gz.dvc | 106.0 B | 88ff06e1766f43d0af0974abdccf3b3c |
| ENCFF986SYJ.tabix.bed.gz.tbi | 194.23 KB | 09893c4770aa39ec975bdfc1a858fe0a |
| ENCFF986SYJ.tabix.bed.gz.tbi.dvc | 110.0 B | 3841e3e479bab10916dca8b516369cab |
| genomic_resource.yaml | 2.66 KB | 2d03ae790cef9356a16baf464aadaefe |
| genomic_resource_original.yaml | 2.56 KB | 05006d05762d0558bf4acd13640828eb |
| statistics/ |