DNase-seq_ENCSR355PNF
DNase-seq ENCSR355PNF [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR355PNF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR355PNF [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF885XPI|/files/ENCFF885XPI/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR355PNF | float |
DNase-seq_ENCSR355PNF |
DNase-seq ENCSR355PNF [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (90 or above years)"]
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[0.0703, 53] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF187DOW.bed.gz | 391.97 KB | d5aaf6b7746e5c014811b0883f4f8d95 |
| ENCFF187DOW.bed.gz.dvc | 100.0 B | ad673fbafff5fbb2d38318c2d085f949 |
| ENCFF187DOW.tabix.bed.gz | 359.84 KB | bfff278726f44ed1b60f417a6c9420d4 |
| ENCFF187DOW.tabix.bed.gz.dvc | 106.0 B | 74d2999b968c8e44f0d01435656308b8 |
| ENCFF187DOW.tabix.bed.gz.tbi | 135.47 KB | e4c2a26057594b969fddf4f102901dab |
| ENCFF187DOW.tabix.bed.gz.tbi.dvc | 110.0 B | 4717f711f6410939ee09eca4d393774e |
| genomic_resource.yaml | 2.25 KB | 821633e7417294e95e0eee1d6edc40a8 |
| genomic_resource_original.yaml | 2.1 KB | 8447bfd14b9e6b01dfe645e4f435fb59 |
| statistics/ |