DNase-seq_ENCSR355ARR
DNase-seq ENCSR355ARR [biosample_summary="Homo sapiens effector CD4-positive, alpha-beta T cell male adult (56 years)"]
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| Id: | DNase-seq/ENCSR355ARR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR355ARR [biosample_summary="Homo sapiens effector CD4-positive, alpha-beta T cell male adult (56 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (56 years) output_type: peaks audit_warning: Alignment file {ENCFF362PIS|/files/ENCFF362PIS/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 46820526 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF362PIS|/files/ENCFF362PIS/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR355ARR | float |
DNase-seq_ENCSR355ARR |
DNase-seq ENCSR355ARR [biosample_summary="Homo sapiens effector CD4-positive, alpha-beta T cell male adult (56 years)"]
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[0.278, 51.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF972MAL.bed.gz | 282.31 KB | ec4cfaa60e83acf6c03a08827ff72a05 |
| ENCFF972MAL.bed.gz.dvc | 100.0 B | 47e7bd55ecb71a4ec7a16c8e04e4d4b6 |
| ENCFF972MAL.tabix.bed.gz | 256.91 KB | 0942b6e659a92c2403fd2a76399231cf |
| ENCFF972MAL.tabix.bed.gz.dvc | 106.0 B | 9e939f3ca77e087ac5df06e0bef784b0 |
| ENCFF972MAL.tabix.bed.gz.tbi | 147.56 KB | 44f2cddb063cc02953249f7ebd8ed023 |
| ENCFF972MAL.tabix.bed.gz.tbi.dvc | 110.0 B | 886a83955001b6e247dc38ef33ed6c1b |
| genomic_resource.yaml | 2.72 KB | 72853b7c8a32a87f5584e15dba33b7b8 |
| genomic_resource_original.yaml | 2.6 KB | 20f30b4ebe72f612f77c6e8249c207dc |
| statistics/ |