DNase-seq_ENCSR346JWH
DNase-seq ENCSR346JWH [biosample_summary="Homo sapiens A673"]
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| Id: | DNase-seq/ENCSR346JWH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR346JWH [biosample_summary="Homo sapiens A673"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF261YSH|/files/ENCFF261YSH/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF860UCH|/files/ENCFF860UCH/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.36. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR346JWH | float |
DNase-seq_ENCSR346JWH |
DNase-seq ENCSR346JWH [biosample_summary="Homo sapiens A673"]
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[0.0334, 30.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF355NVJ.bed.gz | 1.95 MB | 0c2a155608167660072385c5452e0224 |
| ENCFF355NVJ.bed.gz.dvc | 101.0 B | 0644317f80c020fc470f36f41e244590 |
| ENCFF355NVJ.tabix.bed.gz | 1.78 MB | 07903c3078b7f9fbbbe9a59b926a36d9 |
| ENCFF355NVJ.tabix.bed.gz.dvc | 107.0 B | e7601d8582b57461de213cd8684d3dea |
| ENCFF355NVJ.tabix.bed.gz.tbi | 632.97 KB | a6e97cdb6f26013ca2593e692c1877ce |
| ENCFF355NVJ.tabix.bed.gz.tbi.dvc | 110.0 B | 7d14dee09c95efd6e7aae2971f070942 |
| genomic_resource.yaml | 2.76 KB | 74d7ee3d77021876401563ae8eaae3d2 |
| genomic_resource_original.yaml | 2.69 KB | f014356494aca2d1f75a9a41cefbd113 |
| statistics/ |