Resource

Id DNase-seq/ENCSR346IHHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR346IHH [biosample_summary="Homo sapiens Daoy"]
Description
Labels
  • accession: ENCSR346IHH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005698/
  • biosample_summary: Homo sapiens Daoy
  • date_created: 2014-06-20T22:01:46.836105+00:00
  • date_released: 2015-08-18
  • doi: 10.17989/ENCSR346IHH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR346IHH float

DNase-seq_ENCSR346IHH
DNase-seq ENCSR346IHH [biosample_summary="Homo sapiens Daoy"]
 HISTOGRAM FOR DNase-seq_ENCSR346IHH [1, 3.86e+04]
n
42,661,722
mean
315
sd
592

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 426617221.33% 284221
chr1 4092763 1.64% 27275
chr2 3341715 1.38% 22257
chr3 2591099 1.31% 17258
chr4 1921677 1.01% 12799
chr5 2628316 1.45% 17511
chr6 2608889 1.53% 17379
chr7 2502823 1.57% 16671
chr8 1971160 1.36% 13135
chr9 1939313 1.40% 12920
chr10 1856712 1.39% 12374
chr11 2045170 1.51% 13627
chr12 2229337 1.67% 14859
chr13 990600 0.87% 6601
chr14 1521440 1.42% 10132
chr15 1430200 1.40% 9531
chr16 1322490 1.46% 8813
chr17 1723043 2.07% 11473
chr18 941655 1.17% 6274
chr19 1387252 2.37% 9241
chr20 1096904 1.70% 7308
chr21 577950 1.24% 3853
chr22 793043 1.56% 5284
chrX 1120121 0.72% 7459
chrY 28050 0.05% 187
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 284221 6 447 150.1 150
global segment-length histogram

Files

Filename Size md5
ENCFF221FND.bed.gz 2.71 MB 0ca298ddbf6bda2d8a19cffc1227cba6
ENCFF221FND.tabix.bed.gz 2.35 MB 05456c534ec513709c7d9ac18945d05b
ENCFF221FND.tabix.bed.gz.tbi 752.52 KB 95860836918a98d6ebc3427e72240309
genomic_resource.yaml 1.25 KB 5181ab7922513068db7b54314a64b56c
statistics/