Resource

Id DNase-seq/ENCSR346GIPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR346GIP [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (42 years)"]
Description
Labels
  • accession: ENCSR346GIP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell male adult (42 years)
  • date_created: 2020-04-20T23:45:40.962493+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR346GIP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR346GIP float

DNase-seq_ENCSR346GIP
DNase-seq ENCSR346GIP [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (42 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR346GIP [0.165, 49.1]
n
9,027,857
mean
5.35
sd
5.82

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 90278570.28% 42872
chr1 931940 0.37% 4390
chr2 611616 0.25% 2909
chr3 479289 0.24% 2263
chr4 308222 0.16% 1439
chr5 401219 0.22% 1895
chr6 541310 0.32% 2520
chr7 410697 0.26% 1977
chr8 319338 0.22% 1548
chr9 359014 0.26% 1728
chr10 404532 0.30% 1913
chr11 458434 0.34% 2212
chr12 468117 0.35% 2195
chr13 176619 0.15% 828
chr14 320318 0.30% 1487
chr15 291331 0.29% 1421
chr16 361801 0.40% 1734
chr17 559238 0.67% 2689
chr18 138054 0.17% 678
chr19 635746 1.08% 2919
chr20 248028 0.38% 1224
chr21 101307 0.22% 489
chr22 225259 0.44% 1097
chrX 266144 0.17% 1272
chrY 10284 0.02% 45
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 42872 3 1040 210.58 200
global segment-length histogram

Files

Filename Size md5
ENCFF132WIM.bed.gz 475.74 KB 5b58bef2c1fccc28a70ff0b6d0d05f46
ENCFF132WIM.tabix.bed.gz 436.35 KB eadfa3ec948a9f3f25c7eceb41a9c54c
ENCFF132WIM.tabix.bed.gz.tbi 210.97 KB 77142d6a5f1e63aaa6d59f6c42db433a
genomic_resource.yaml 1.26 KB 265900bf3e975cee96ebb4bca8d345ca
statistics/