DNase-seq_ENCSR344FLH
DNase-seq ENCSR344FLH [biosample_summary="Homo sapiens brain tissue female embryo (109 days)"]
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| Id: | DNase-seq/ENCSR344FLH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR344FLH [biosample_summary="Homo sapiens brain tissue female embryo (109 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (109 days) output_type: peaks audit_warning: Alignment file {ENCFF612HKW|/files/ENCFF612HKW/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 27902696 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR344FLH | float |
DNase-seq_ENCSR344FLH |
DNase-seq ENCSR344FLH [biosample_summary="Homo sapiens brain tissue female embryo (109 days)"]
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[0.216, 28.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF460YFR.bed.gz | 695.77 KB | b27902d33979518a825a28a668b7e518 |
| ENCFF460YFR.bed.gz.dvc | 100.0 B | 5fd8dd0dae9c669bc6559547c604c470 |
| ENCFF460YFR.tabix.bed.gz | 619.6 KB | 630fb811891c7f16adf5742b8d3ab064 |
| ENCFF460YFR.tabix.bed.gz.dvc | 106.0 B | 40e9837956298898a4839756be8ff130 |
| ENCFF460YFR.tabix.bed.gz.tbi | 376.41 KB | 2026830cbff48c0a78b0e3e475d9e587 |
| ENCFF460YFR.tabix.bed.gz.tbi.dvc | 110.0 B | 7be51ead8651d6034ce353ba8f2c4802 |
| genomic_resource.yaml | 1.82 KB | c122f5dda0aff79d716b59bd69757634 |
| genomic_resource_original.yaml | 1.73 KB | de556dd533e025fdf7545567b0519539 |
| statistics/ |