Resource

Id DNase-seq/ENCSR342OGIcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR342OGI [biosample_summary="Homo sapiens T-cell male adult (27 years)"]
Description
Labels
  • accession: ENCSR342OGI
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (27 years)
  • date_created: 2020-04-12T19:00:06.952359+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR342OGI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (27 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR342OGI float

DNase-seq_ENCSR342OGI

DNase-seq ENCSR342OGI [biosample_summary="Homo sapiens T-cell male adult (27 years)"]
HISTOGRAM FOR DNase-seq_ENCSR342OGI [0.136, 110]
n
9,810,240
mean
7.67
sd
11

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 98102400.30% 55917
chr1 978672 0.39% 5577
chr2 691328 0.29% 3985
chr3 541131 0.27% 3111
chr4 348578 0.18% 1974
chr5 446885 0.25% 2545
chr6 583516 0.34% 3327
chr7 450427 0.28% 2595
chr8 359495 0.25% 2061
chr9 385071 0.28% 2201
chr10 440141 0.33% 2527
chr11 501349 0.37% 2843
chr12 501947 0.38% 2881
chr13 204333 0.18% 1166
chr14 348538 0.33% 1965
chr15 320846 0.31% 1841
chr16 394855 0.44% 2235
chr17 591196 0.71% 3356
chr18 165884 0.21% 961
chr19 616952 1.05% 3393
chr20 275849 0.43% 1605
chr21 121595 0.26% 688
chr22 236969 0.47% 1357
chrX 293155 0.19% 1659
chrY 11528 0.02% 64
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 55917 7 640 175.44 165
global segment-length histogram

Files

Filename Size md5
ENCFF808RJY.bed.gz 625.09 KB 6569257d67a9b84e0f08161fc757a655
ENCFF808RJY.tabix.bed.gz 568.04 KB f8ff1f0eefd2272af905b914470a6acd
ENCFF808RJY.tabix.bed.gz.tbi 254.79 KB febb2b8774ac4df65e9d4d1a467d72e8
genomic_resource.yaml 1.18 KB a7d88a6252a7ef86eaee6940f78c7345
statistics/