Resource

Id DNase-seq/ENCSR342NCXcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR342NCX [biosample_summary="Homo sapiens thymus tissue female embryo (113 days)"]
Description
Labels
  • accession: ENCSR342NCX
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002370/
  • biosample_summary: Homo sapiens thymus tissue female embryo (113 days)
  • date_created: 2015-09-16T21:43:02.651698+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR342NCX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (113 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR342NCX float

DNase-seq_ENCSR342NCX
DNase-seq ENCSR342NCX [biosample_summary="Homo sapiens thymus tissue female embryo (113 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR342NCX [2, 1.48e+04]
n
30,706,770
mean
289
sd
573

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 307067700.95% 204310
chr1 2803757 1.13% 18669
chr2 2539377 1.05% 16890
chr3 2032948 1.03% 13514
chr4 1491373 0.78% 9914
chr5 1623072 0.89% 10799
chr6 1877321 1.10% 12490
chr7 1533220 0.96% 10202
chr8 1356800 0.93% 9030
chr9 1265506 0.91% 8427
chr10 1473117 1.10% 9806
chr11 1451717 1.07% 9654
chr12 1529874 1.15% 10181
chr13 845646 0.74% 5624
chr14 1046250 0.98% 6958
chr15 1029604 1.01% 6847
chr16 1000902 1.11% 6664
chr17 1355218 1.63% 9025
chr18 685958 0.85% 4555
chr19 992903 1.69% 6617
chr20 804710 1.25% 5355
chr21 419377 0.90% 2786
chr22 608362 1.20% 4053
chrX 919058 0.59% 6112
chrY 20700 0.04% 138
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 204310 4 558 150.29 150
global segment-length histogram

Files

Filename Size md5
ENCFF189LKP.bed.gz 1.96 MB db2dd34a0478e4945e5c04174f9881ba
ENCFF189LKP.tabix.bed.gz 1.69 MB 681fad2635c9aa5eea676ec43adb1f20
ENCFF189LKP.tabix.bed.gz.tbi 610.94 KB 5a72d56f1f0d8f425b22041e416bde42
genomic_resource.yaml 1.39 KB fd9fdabc66411ab6b2b7b8357abf6783
statistics/