DNase-seq_ENCSR340XQX
DNase-seq ENCSR340XQX [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR340XQX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR340XQX [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF669HSH|/files/ENCFF669HSH/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR340XQX | float |
DNase-seq_ENCSR340XQX |
DNase-seq ENCSR340XQX [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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[0.0762, 19.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF135AQL.bed.gz | 746.77 KB | c61bb56479b313a18dcc80be4776c5c5 |
| ENCFF135AQL.bed.gz.dvc | 100.0 B | 5ab66bd0f1a64ef6b18f0d7825f91499 |
| ENCFF135AQL.tabix.bed.gz | 680.95 KB | 6f9fc62246745fd2e4526cbe7668e091 |
| ENCFF135AQL.tabix.bed.gz.dvc | 106.0 B | 69273a4afde07906a000990dd2b501e6 |
| ENCFF135AQL.tabix.bed.gz.tbi | 284.19 KB | 799a29cba241afe2bc776944afe9a0c6 |
| ENCFF135AQL.tabix.bed.gz.tbi.dvc | 110.0 B | f4bea5bb08d26bb77723bc0efde5b01b |
| genomic_resource.yaml | 2.27 KB | 479146fc08c4a7f9f93627d320bdcea0 |
| genomic_resource_original.yaml | 2.11 KB | 39894db6d11b77f21dbc54ffce16255a |
| statistics/ |