DNase-seq_ENCSR340MRJ
DNase-seq ENCSR340MRJ [biosample_summary="Homo sapiens transverse colon tissue male adult (54 years)"]
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| Id: | DNase-seq/ENCSR340MRJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR340MRJ [biosample_summary="Homo sapiens transverse colon tissue male adult (54 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF650EYC|/files/ENCFF650EYC/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR340MRJ | float |
DNase-seq_ENCSR340MRJ |
DNase-seq ENCSR340MRJ [biosample_summary="Homo sapiens transverse colon tissue male adult (54 years)"]
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[0.0336, 27.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF690KZJ.bed.gz | 2.01 MB | a361602f43ad36fa90d5a86acf035231 |
| ENCFF690KZJ.bed.gz.dvc | 101.0 B | 17ffc81652b2034b24ae2659e8a949af |
| ENCFF690KZJ.tabix.bed.gz | 1.9 MB | 263b55d061eb5252869ca70716afea9f |
| ENCFF690KZJ.tabix.bed.gz.dvc | 107.0 B | f6395e6c22bca79828eb627970549f4d |
| ENCFF690KZJ.tabix.bed.gz.tbi | 340.04 KB | 83a315cc36584ae1e186674a132fce4a |
| ENCFF690KZJ.tabix.bed.gz.tbi.dvc | 110.0 B | c31b7d471af0bad400c5793f049b5a38 |
| genomic_resource.yaml | 2.04 KB | 45c4e67c37bc99660ee51baf54d3a7bd |
| genomic_resource_original.yaml | 1.94 KB | 190f1a4ae016359457a3ed0b4b420ce3 |
| statistics/ |