DNase-seq_ENCSR339TVH
DNase-seq ENCSR339TVH [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR339TVH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR339TVH [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF948ZYY|/files/ENCFF948ZYY/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR339TVH | float |
DNase-seq_ENCSR339TVH |
DNase-seq ENCSR339TVH [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
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[0.145, 20.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF126LDW.bed.gz | 562.11 KB | 4fc120db2b9a026df2be4724fbcfbda4 |
| ENCFF126LDW.bed.gz.dvc | 100.0 B | 9602abe644690c65a50a54a163b4147e |
| ENCFF126LDW.tabix.bed.gz | 509.71 KB | 4ac6acc245a6dd74776dba38686326c0 |
| ENCFF126LDW.tabix.bed.gz.dvc | 106.0 B | 3b5dd26bfb4bb93f4ece45a80a864315 |
| ENCFF126LDW.tabix.bed.gz.tbi | 265.31 KB | 74242f2bbf170875c7e500fd5b647d50 |
| ENCFF126LDW.tabix.bed.gz.tbi.dvc | 110.0 B | 8f641b5e988fb191af8e63f85fae2d96 |
| genomic_resource.yaml | 2.29 KB | ec29c7ed5c22ade44d63530333685c98 |
| genomic_resource_original.yaml | 2.13 KB | 7e7877cab7a6226bcf8c2a4a1f18f290 |
| statistics/ |