Resource

Id DNase-seq/ENCSR336RGTcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR336RGT [biosample_summary="Homo sapiens placenta tissue male embryo"]
Description
Labels
  • accession: ENCSR336RGT
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001987/
  • biosample_summary: Homo sapiens placenta tissue male embryo
  • date_created: 2019-08-02T16:57:25.997982+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR336RGT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR336RGT float

DNase-seq_ENCSR336RGT

DNase-seq ENCSR336RGT [biosample_summary="Homo sapiens placenta tissue male embryo"]
HISTOGRAM FOR DNase-seq_ENCSR336RGT [0.0262, 38.9]
n
37,915,774
mean
1.4
sd
2.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 379157741.18% 203534
chr1 3671539 1.47% 19655
chr2 2978820 1.23% 16066
chr3 2102429 1.06% 11375
chr4 1202529 0.63% 6642
chr5 1705246 0.94% 9282
chr6 1677784 0.98% 9285
chr7 2236527 1.40% 11846
chr8 1532248 1.06% 8211
chr9 1783032 1.29% 9509
chr10 2000288 1.50% 10628
chr11 2371553 1.76% 12436
chr12 1493657 1.12% 8242
chr13 592534 0.52% 3266
chr14 1366630 1.28% 7257
chr15 1375351 1.35% 7412
chr16 1603273 1.77% 8575
chr17 2042535 2.45% 10918
chr18 574017 0.71% 3138
chr19 1504478 2.57% 7973
chr20 1276819 1.98% 6845
chr21 705570 1.51% 3680
chr22 1395602 2.75% 7203
chrX 683373 0.44% 3841
chrY 39940 0.07% 249
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 203534 1 1080 186.29 180
global segment-length histogram

Files

Filename Size md5
ENCFF987IMB.bed.gz 2.07 MB 6cfe9017a8282697250f6db99497e113
ENCFF987IMB.tabix.bed.gz 1.92 MB 533efc52abd6712941fb2539d1e0a516
ENCFF987IMB.tabix.bed.gz.tbi 396.34 KB 05788d1a74fe4a3fc091a78a43358b48
genomic_resource.yaml 1.16 KB 8181bed97ba10379e1956af59ea0af0c
statistics/