| Id: | DNase-seq/ENCSR335LOQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR335LOQ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-7 for 48 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-7 for 48 hours output_type: peaks audit_warning: Alignment file {ENCFF496LAJ|/files/ENCFF496LAJ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 22858332 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR335LOQ | float |
DNase-seq_ENCSR335LOQ |
DNase-seq ENCSR335LOQ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-7 for 48 hours"]
|
 |
[0.395, 59.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF380LVF.bed.gz | 553.85 KB | e7c7767b812429098952e130ee020d90 |
| ENCFF380LVF.bed.gz.dvc | 100.0 B | 17c4c35b307697d5e8a52d8aa018dd8e |
| ENCFF380LVF.tabix.bed.gz | 498.07 KB | a16b6714f52782291d61d7ad4b87ad8f |
| ENCFF380LVF.tabix.bed.gz.dvc | 106.0 B | 44d0f74ce127e82a9fb5725bcbf3f09a |
| ENCFF380LVF.tabix.bed.gz.tbi | 255.35 KB | ca57ea349b2c456609326b8527effa68 |
| ENCFF380LVF.tabix.bed.gz.tbi.dvc | 110.0 B | 58654c73a1ae94a9d0a86890970a79b5 |
| genomic_resource.yaml | 2.46 KB | b0cb5e44fbcbaced74a257e52ab20519 |
| genomic_resource_original.yaml | 2.23 KB | 37843e2e7aa0802c15c5e6a7a98f0277 |
| statistics/ |