| Id: | DNase-seq/ENCSR335EYA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR335EYA [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-12 subunit alpha for 1 hour, 100 ng/mL Interleukin-12 subunit beta for 1 hour"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-12 subunit alpha for 1 hour, 100 ng/mL Interleukin-12 subunit beta for 1 hour output_type: peaks audit_warning: Alignment file {ENCFF846AOP|/files/ENCFF846AOP/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 26694366 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR335EYA | float |
DNase-seq_ENCSR335EYA |
DNase-seq ENCSR335EYA [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-12 subunit alpha for 1 hour, 100 ng/mL Interleukin-12 subunit beta for 1 hour"]
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[0.488, 46.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF768VSF.bed.gz | 409.81 KB | a7dacab3372d7b8cf0db5b0422e376d4 |
| ENCFF768VSF.bed.gz.dvc | 100.0 B | 8159a914f043473fc7e181d14ab9d318 |
| ENCFF768VSF.tabix.bed.gz | 369.37 KB | fe26b76c25006b96208a195a782fb656 |
| ENCFF768VSF.tabix.bed.gz.dvc | 106.0 B | c10e2b7bfa2a3e884bae3105081d428d |
| ENCFF768VSF.tabix.bed.gz.tbi | 202.34 KB | bffd88184115ffac3b2a8f69b685a47c |
| ENCFF768VSF.tabix.bed.gz.tbi.dvc | 110.0 B | ce0de987ee44f23d6d99620655ffcee1 |
| genomic_resource.yaml | 2.77 KB | 53c2283ddc15afceb9977ccbf150f213 |
| genomic_resource_original.yaml | 2.49 KB | eb9324d7b04ec8422b0f288fcba377ca |
| statistics/ |