Resource

Id DNase-seq/ENCSR335EYAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR335EYA [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-12 subunit alpha for 1 hour, 100 ng/mL Interleukin-12 subunit beta for 1 hour"]
Description
Labels
  • accession: ENCSR335EYA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000669/
  • biosample_summary: Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-12 subunit alpha for 1 hour, 100 ng/mL Interleukin-12 subunit beta for 1 hour
  • date_created: 2020-04-20T23:45:27.746937+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR335EYA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-12 subunit alpha for 1 hour, 100 ng/mL Interleukin-12 subunit beta for 1 hour
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR335EYA float

DNase-seq_ENCSR335EYA
DNase-seq ENCSR335EYA [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-12 subunit alpha for 1 hour, 100 ng/mL Interleukin-12 subunit beta for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR335EYA [0.488, 46.5]
n
6,753,327
mean
6.72
sd
6.33

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 67533270.21% 37446
chr1 682852 0.27% 3778
chr2 472330 0.20% 2629
chr3 367791 0.19% 2057
chr4 234492 0.12% 1308
chr5 295315 0.16% 1651
chr6 387811 0.23% 2141
chr7 315107 0.20% 1755
chr8 242024 0.17% 1371
chr9 271222 0.20% 1507
chr10 295100 0.22% 1642
chr11 343042 0.25% 1911
chr12 351756 0.26% 1932
chr13 137605 0.12% 740
chr14 242142 0.23% 1339
chr15 218786 0.21% 1234
chr16 281293 0.31% 1541
chr17 412426 0.50% 2298
chr18 101699 0.13% 578
chr19 483449 0.82% 2575
chr20 188840 0.29% 1081
chr21 72672 0.16% 406
chr22 166978 0.33% 933
chrX 182170 0.12% 1006
chrY 6425 0.01% 33
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 37446 3 740 180.35 180
global segment-length histogram

Files

Filename Size md5
ENCFF768VSF.bed.gz 409.81 KB a7dacab3372d7b8cf0db5b0422e376d4
ENCFF768VSF.tabix.bed.gz 369.37 KB fe26b76c25006b96208a195a782fb656
ENCFF768VSF.tabix.bed.gz.tbi 202.34 KB bffd88184115ffac3b2a8f69b685a47c
genomic_resource.yaml 2.77 KB 53c2283ddc15afceb9977ccbf150f213
statistics/