DNase-seq_ENCSR334MDJ
DNase-seq ENCSR334MDJ [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (89 years)"]
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| Id: | DNase-seq/ENCSR334MDJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR334MDJ [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (89 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (89 years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF591CAE|/files/ENCFF591CAE/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR334MDJ | float |
DNase-seq_ENCSR334MDJ |
DNase-seq ENCSR334MDJ [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (89 years)"]
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[0.0519, 13.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF523RDN.bed.gz | 948.66 KB | 557c84a9dcec38f8d880fafb6e972490 |
| ENCFF523RDN.bed.gz.dvc | 100.0 B | 7434433bd3a6884f64d268776903255f |
| ENCFF523RDN.tabix.bed.gz | 865.2 KB | 1b229fce040128e5577345ed090e56fa |
| ENCFF523RDN.tabix.bed.gz.dvc | 106.0 B | db99694fea5d5ad24a015a2a3f5cd25f |
| ENCFF523RDN.tabix.bed.gz.tbi | 330.65 KB | 5a135a57b0a1f85771a9d22439ff47f1 |
| ENCFF523RDN.tabix.bed.gz.tbi.dvc | 110.0 B | 21a3070873966e29cdca810709c5c3ce |
| genomic_resource.yaml | 2.24 KB | 9ad449ccebd9579d41ea3b4809989f3a |
| genomic_resource_original.yaml | 2.09 KB | da9096abfde7e676510fa040183b3d34 |
| statistics/ |