Resource

Id DNase-seq/ENCSR333BUPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR333BUP [biosample_summary="Homo sapiens with Cognitive impairment; head of caudate nucleus tissue female adult (86 years)"]
Description
Labels
  • accession: ENCSR333BUP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002626/
  • biosample_summary: Homo sapiens with Cognitive impairment; head of caudate nucleus tissue female adult (86 years)
  • date_created: 2020-05-28T00:56:22.790146+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR333BUP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (86 years) with Cognitive impairment
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR333BUP float

DNase-seq_ENCSR333BUP
DNase-seq ENCSR333BUP [biosample_summary="Homo sapiens with Cognitive impairment; head of caudate nucleus tissue female adult (86 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR333BUP [0.0714, 38.3]
n
14,277,719
mean
2.58
sd
2.94

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 142777190.44% 80676
chr1 1337479 0.54% 7456
chr2 1119974 0.46% 6425
chr3 819132 0.41% 4657
chr4 566421 0.30% 3227
chr5 701547 0.39% 4055
chr6 721783 0.42% 4100
chr7 707963 0.44% 4075
chr8 594828 0.41% 3463
chr9 634480 0.46% 3559
chr10 706332 0.53% 4005
chr11 820134 0.61% 4567
chr12 682758 0.51% 3833
chr13 292767 0.26% 1706
chr14 472174 0.44% 2679
chr15 477160 0.47% 2706
chr16 570961 0.63% 3174
chr17 729676 0.88% 4051
chr18 275892 0.34% 1618
chr19 733767 1.25% 3905
chr20 441197 0.68% 2525
chr21 175161 0.37% 981
chr22 368468 0.73% 2056
chrX 327438 0.21% 1851
chrY 227 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 80676 2 815 176.98 180
global segment-length histogram

Files

Filename Size md5
ENCFF132JHR.bed.gz 895.5 KB 0484f80d491bf41b799635c80b02d002
ENCFF132JHR.tabix.bed.gz 809.74 KB 594f47126cb17fe3770c1f9eb427d950
ENCFF132JHR.tabix.bed.gz.tbi 353.67 KB 3872ce0f35b425c53b85c99964bb6420
genomic_resource.yaml 1.39 KB c632f0941fdbc49eaef8fd8870e67fdc
statistics/