Resource

Id DNase-seq/ENCSR332HADcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR332HAD [biosample_summary="Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (56 years)"]
Description
Labels
  • accession: ENCSR332HAD
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000900/
  • biosample_summary: Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (56 years)
  • date_created: 2020-05-11T17:50:16.274608+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR332HAD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (56 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR332HAD float

DNase-seq_ENCSR332HAD
DNase-seq ENCSR332HAD [biosample_summary="Homo sapiens naive thymus-derived CD8-positive, alpha-beta T cell male adult (56 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR332HAD [0.185, 107]
n
8,665,558
mean
8.64
sd
12.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 86655580.27% 44488
chr1 878674 0.35% 4531
chr2 593896 0.25% 3056
chr3 453284 0.23% 2317
chr4 289847 0.15% 1485
chr5 371407 0.20% 1925
chr6 510848 0.30% 2602
chr7 402229 0.25% 2074
chr8 301204 0.21% 1551
chr9 339587 0.25% 1750
chr10 364145 0.27% 1862
chr11 446901 0.33% 2293
chr12 448931 0.34% 2296
chr13 171004 0.15% 864
chr14 311336 0.29% 1596
chr15 273303 0.27% 1426
chr16 364653 0.40% 1874
chr17 550141 0.66% 2819
chr18 126358 0.16% 664
chr19 617797 1.05% 3120
chr20 249625 0.39% 1298
chr21 107783 0.23% 555
chr22 217904 0.43% 1134
chrX 264725 0.17% 1347
chrY 9976 0.02% 49
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 44488 4 700 194.78 197
global segment-length histogram

Files

Filename Size md5
ENCFF324ZSV.bed.gz 494.8 KB 4f3a1b85138b15573d9b90b6fce9215a
ENCFF324ZSV.tabix.bed.gz 456.0 KB b7887964bd0f17eddb1111d719f2c83b
ENCFF324ZSV.tabix.bed.gz.tbi 211.02 KB fe90f3138df4c7d62804b6c3c9e9969a
genomic_resource.yaml 1.32 KB 6b63281d64d41e9307c5f0525767cb73
statistics/