DNase-seq_ENCSR330LFP
DNase-seq ENCSR330LFP [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (82 years)"]
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| Id: | DNase-seq/ENCSR330LFP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR330LFP [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (82 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (82 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF355CPA|/files/ENCFF355CPA/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR330LFP | float |
DNase-seq_ENCSR330LFP |
DNase-seq ENCSR330LFP [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (82 years)"]
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[0.0531, 15.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF234IMJ.bed.gz | 1.33 MB | cc12417bbc4b86603a923472429bd3ac |
| ENCFF234IMJ.bed.gz.dvc | 101.0 B | cf72697c74afe918887e44e304b15686 |
| ENCFF234IMJ.tabix.bed.gz | 1.23 MB | 4965850a6bbf7e244f75a4d9a32fd10f |
| ENCFF234IMJ.tabix.bed.gz.dvc | 107.0 B | 2fc86126d4595d33faeabd574a755efe |
| ENCFF234IMJ.tabix.bed.gz.tbi | 312.62 KB | 1d7884ba9b86266b84d7786b9f01143d |
| ENCFF234IMJ.tabix.bed.gz.tbi.dvc | 110.0 B | b8714f58220a17d9436e6357528651f3 |
| genomic_resource.yaml | 2.08 KB | c50f61f517faccd26a105bd8a03f864f |
| genomic_resource_original.yaml | 1.96 KB | 5394ae314e60e783fe7a83f92403840a |
| statistics/ |