DNase-seq_ENCSR330JXM
DNase-seq ENCSR330JXM [biosample_summary="Homo sapiens brain organoid, 90 days post differentiation"]
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| Id: | DNase-seq/ENCSR330JXM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR330JXM [biosample_summary="Homo sapiens brain organoid, 90 days post differentiation"] |
| Description: |
status: released biological_replicates: Rep 1 summary: brain organoid 90 days post differentiation output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF424NSY|/files/ENCFF424NSY/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.22. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR330JXM | float |
DNase-seq_ENCSR330JXM |
DNase-seq ENCSR330JXM [biosample_summary="Homo sapiens brain organoid, 90 days post differentiation"]
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[0.0568, 12.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF966AQE.bed.gz | 533.07 KB | 42a733a3828c6eb16afb23856ea28b7b |
| ENCFF966AQE.bed.gz.dvc | 100.0 B | b0b96d967b10d5c31a48e7dcc39a9f5e |
| ENCFF966AQE.tabix.bed.gz | 490.33 KB | 861effa0c2da8ee28f59725305e889bb |
| ENCFF966AQE.tabix.bed.gz.dvc | 106.0 B | 513afca88e6f921d33f16a067c7470e3 |
| ENCFF966AQE.tabix.bed.gz.tbi | 241.52 KB | 47947fa5d48451eb669c88c937107480 |
| ENCFF966AQE.tabix.bed.gz.tbi.dvc | 110.0 B | 9c8f091ae1fbb90cec557fa20045ae2b |
| genomic_resource.yaml | 2.08 KB | 195e3b7552f471ad651ee8efdad5197e |
| genomic_resource_original.yaml | 1.97 KB | 33b4b00e790f10980471c22d909d40d7 |
| statistics/ |