DNase-seq_ENCSR329FHR
DNase-seq ENCSR329FHR [biosample_summary="Homo sapiens with Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR329FHR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR329FHR [biosample_summary="Homo sapiens with Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with Cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF508VVI|/files/ENCFF508VVI/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR329FHR | float |
DNase-seq_ENCSR329FHR |
DNase-seq ENCSR329FHR [biosample_summary="Homo sapiens with Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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[0.0596, 13.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF765WET.bed.gz | 648.65 KB | ab8badac598a960e13a52b36b75f270b |
| ENCFF765WET.bed.gz.dvc | 100.0 B | 5abc9b1ade0d291570547d8076c7b3ec |
| ENCFF765WET.tabix.bed.gz | 599.31 KB | 53760b79c2dee5c93de64acbfd44dd93 |
| ENCFF765WET.tabix.bed.gz.dvc | 106.0 B | cfb7058e4e781ce1d36c840ebc5b608f |
| ENCFF765WET.tabix.bed.gz.tbi | 188.94 KB | 4b30ed6d2f37414eed87c7834dd06bcf |
| ENCFF765WET.tabix.bed.gz.tbi.dvc | 110.0 B | 83873074816d4f5b24f1c07827f3d249 |
| genomic_resource.yaml | 2.28 KB | 2ba1e7ad54203807eaf0409bc0a66e5b |
| genomic_resource_original.yaml | 2.12 KB | 950316517fc42e01ae3b170c59513f64 |
| statistics/ |