Resource

Id DNase-seq/ENCSR325LYJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR325LYJ [biosample_summary="Homo sapiens fibroblast of upper back skin male embryo (97 days)"]
Description
Labels
  • accession: ENCSR325LYJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0011021/
  • biosample_summary: Homo sapiens fibroblast of upper back skin male embryo (97 days)
  • date_created: 2015-09-16T21:42:12.936960+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR325LYJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (97 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR325LYJ float

DNase-seq_ENCSR325LYJ
DNase-seq ENCSR325LYJ [biosample_summary="Homo sapiens fibroblast of upper back skin male embryo (97 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR325LYJ [0.0346, 46.4]
n
47,856,463
mean
1.96
sd
3.24

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 478564631.49% 252277
chr1 4281545 1.72% 22689
chr2 4085084 1.69% 21500
chr3 3376321 1.70% 17820
chr4 2798889 1.47% 14854
chr5 2993270 1.65% 15678
chr6 3045999 1.78% 16015
chr7 2438044 1.53% 12885
chr8 2353004 1.62% 12430
chr9 2064077 1.49% 10840
chr10 2349551 1.76% 12322
chr11 2356499 1.74% 12404
chr12 2329478 1.75% 12284
chr13 1425794 1.25% 7522
chr14 1434538 1.34% 7603
chr15 1577241 1.55% 8264
chr16 1263357 1.40% 6669
chr17 1687428 2.03% 8826
chr18 1190956 1.48% 6327
chr19 1025967 1.75% 5334
chr20 1103998 1.71% 5822
chr21 595442 1.27% 3111
chr22 646546 1.27% 3428
chrX 1375080 0.88% 7340
chrY 58355 0.10% 310
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 252277 2 1220 189.7 180
global segment-length histogram

Files

Filename Size md5
ENCFF961CQT.bed.gz 2.72 MB 5eaf68ed4680f7407dd629d0f49cb4c5
ENCFF961CQT.tabix.bed.gz 2.47 MB 1e66a9c63dba14094ae479490ede064a
ENCFF961CQT.tabix.bed.gz.tbi 718.9 KB cb02fea4cf19cdab7c5939e95a3aa2f6
genomic_resource.yaml 1.25 KB 4b3a6152f68534b0e75476a90af916a7
statistics/